No. words: 1019; after pruning: 993


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 0.9 (1,1:-11)  113  0.00 0.00 0.84  UCD012R_E08_BE445431Ta19P025F08P012C111R1_056.ab1        1   119 (2)    UCD022_G11_BE445431Ta19P025F08P012C111R2_083.ab1       13   130 (768) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  56 nodes

 30 str. conn. components

Path
    1    UCD022_G11_BE445431Ta19P025F08P012C111R2_083.ab1     1 
   24    UCD012R_E08_BE445431Ta19P025F08P012C111R1_056.ab1    13 
   40    UCD022_G11_BE445431Ta19P025F08P012C111R2_083.ab1    40 
   76    UCD012R_E08_BE445431Ta19P025F08P012C111R1_056.ab1    65 
   80    UCD022_G11_BE445431Ta19P025F08P012C111R2_083.ab1    80 
Contig length: old 898, new 898

Contig length: old 898, new 899
New start: 0 
I Change at: 21; seg lengths: entry 1, contig 0