No. words: 1075; after pruning: 1049


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 0.5 (1,1:866)  154  4.95 0.00 0.00  UCD012F_G08_BE445431Ta21P025F08P012C111F1_052.ab1        1   182 (5)  C UCD022_A12_BE445431Ta21P025F08P012C111R2_096.ab1   (21)   867   686 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  74 nodes

 39 str. conn. components

Path
    1  C UCD022_A12_BE445431Ta21P025F08P012C111R2_096.ab1   888 
   25    UCD012F_G08_BE445431Ta21P025F08P012C111F1_052.ab1     4 
  113  C UCD022_A12_BE445431Ta21P025F08P012C111R2_096.ab1   776 
Contig length: old 888, new 888

Contig length: old 888, new 888
New start: 0