No. words: 1283; after pruning: 1257


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 11.1 (1,1:597)  577  0.00 0.17 0.17  UCD015F_A06_BE445431Ta23P012C05P025B091F1_048.ab1        4   598 (41)  C UCD015R_A06_BE445431Ta23P012C05P025B091R1_048.ab1   (49)   595     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C UCD015R_A06_BE445431Ta23P012C05P025B091R1_048.ab1   644 
  152    UCD015F_A06_BE445431Ta23P012C05P025B091F1_048.ab1   105 
  188  C UCD015R_A06_BE445431Ta23P012C05P025B091R1_048.ab1   457 
  232    UCD015F_A06_BE445431Ta23P012C05P025B091F1_048.ab1   185 
  248  C UCD015R_A06_BE445431Ta23P012C05P025B091R1_048.ab1   397 
  500    UCD015F_A06_BE445431Ta23P012C05P025B091F1_048.ab1   453 
  504  C UCD015R_A06_BE445431Ta23P012C05P025B091R1_048.ab1   141 
  540    UCD015F_A06_BE445431Ta23P012C05P025B091F1_048.ab1   493 
  544  C UCD015R_A06_BE445431Ta23P012C05P025B091R1_048.ab1   101 
  556    UCD015F_A06_BE445431Ta23P012C05P025B091F1_048.ab1   509 
  560  C UCD015R_A06_BE445431Ta23P012C05P025B091R1_048.ab1    85 
  584    UCD015F_A06_BE445431Ta23P012C05P025B091F1_048.ab1   537 
  588  C UCD015R_A06_BE445431Ta23P012C05P025B091R1_048.ab1    57 
  604    UCD015F_A06_BE445431Ta23P012C05P025B091F1_048.ab1   557 
  612  C UCD015R_A06_BE445431Ta23P012C05P025B091R1_048.ab1    33 
  616    UCD015F_A06_BE445431Ta23P012C05P025B091F1_048.ab1   569 
  628  C UCD015R_A06_BE445431Ta23P012C05P025B091R1_048.ab1    17 
  632    UCD015F_A06_BE445431Ta23P012C05P025B091F1_048.ab1   585 
Contig length: old 685, new 686

Contig length: old 686, new 686
New start: 0