No. words: 1286; after pruning: 1260


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:601)  580  0.00 0.33 0.17  UCD015F_C03_BE445431Td01P012C05P025B091F1_027.ab1        1   602 (40)  C UCD015R_C03_BE445431Td01P012C05P025B091R1_027.ab1   (41)   603     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C UCD015R_C03_BE445431Td01P012C05P025B091R1_027.ab1   644 
   90    UCD015F_C03_BE445431Td01P012C05P025B091F1_027.ab1    47 
   98  C UCD015R_C03_BE445431Td01P012C05P025B091R1_027.ab1   547 
  126    UCD015F_C03_BE445431Td01P012C05P025B091F1_027.ab1    83 
  138  C UCD015R_C03_BE445431Td01P012C05P025B091R1_027.ab1   507 
  150    UCD015F_C03_BE445431Td01P012C05P025B091F1_027.ab1   107 
  162  C UCD015R_C03_BE445431Td01P012C05P025B091R1_027.ab1   483 
  166    UCD015F_C03_BE445431Td01P012C05P025B091F1_027.ab1   123 
  170  C UCD015R_C03_BE445431Td01P012C05P025B091R1_027.ab1   475 
  214    UCD015F_C03_BE445431Td01P012C05P025B091F1_027.ab1   171 
  222  C UCD015R_C03_BE445431Td01P012C05P025B091R1_027.ab1   423 
  234    UCD015F_C03_BE445431Td01P012C05P025B091F1_027.ab1   191 
  282  C UCD015R_C03_BE445431Td01P012C05P025B091R1_027.ab1   363 
  302    UCD015F_C03_BE445431Td01P012C05P025B091F1_027.ab1   259 
  334  C UCD015R_C03_BE445431Td01P012C05P025B091R1_027.ab1   311 
  366    UCD015F_C03_BE445431Td01P012C05P025B091F1_027.ab1   323 
  370  C UCD015R_C03_BE445431Td01P012C05P025B091R1_027.ab1   275 
  422    UCD015F_C03_BE445431Td01P012C05P025B091F1_027.ab1   379 
  434  C UCD015R_C03_BE445431Td01P012C05P025B091R1_027.ab1   211 
  474    UCD015F_C03_BE445431Td01P012C05P025B091F1_027.ab1   431 
  502  C UCD015R_C03_BE445431Td01P012C05P025B091R1_027.ab1   143 
  506    UCD015F_C03_BE445431Td01P012C05P025B091F1_027.ab1   463 
  522  C UCD015R_C03_BE445431Td01P012C05P025B091R1_027.ab1   123 
  538    UCD015F_C03_BE445431Td01P012C05P025B091F1_027.ab1   495 
  546  C UCD015R_C03_BE445431Td01P012C05P025B091R1_027.ab1    99 
  554    UCD015F_C03_BE445431Td01P012C05P025B091F1_027.ab1   511 
  562  C UCD015R_C03_BE445431Td01P012C05P025B091R1_027.ab1    83 
  606    UCD015F_C03_BE445431Td01P012C05P025B091F1_027.ab1   563 
Contig length: old 684, new 685

Contig length: old 685, new 685
New start: 0