No. words: 1276; after pruning: 1250


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:593)  576  0.00 0.17 0.17  UCD015F_D03_BE445431Td02P012C05P025B091F1_025.ab1        1   594 (40)  C UCD015R_D03_BE445431Td02P012C05P025B091R1_025.ab1   (48)   594     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C UCD015R_D03_BE445431Td02P012C05P025B091R1_025.ab1   642 
   92    UCD015F_D03_BE445431Td02P012C05P025B091F1_025.ab1    43 
   96  C UCD015R_D03_BE445431Td02P012C05P025B091R1_025.ab1   547 
  120    UCD015F_D03_BE445431Td02P012C05P025B091F1_025.ab1    71 
  136  C UCD015R_D03_BE445431Td02P012C05P025B091R1_025.ab1   507 
  152    UCD015F_D03_BE445431Td02P012C05P025B091F1_025.ab1   103 
  168  C UCD015R_D03_BE445431Td02P012C05P025B091R1_025.ab1   475 
  212    UCD015F_D03_BE445431Td02P012C05P025B091F1_025.ab1   163 
  276  C UCD015R_D03_BE445431Td02P012C05P025B091R1_025.ab1   367 
  300    UCD015F_D03_BE445431Td02P012C05P025B091F1_025.ab1   251 
  332  C UCD015R_D03_BE445431Td02P012C05P025B091R1_025.ab1   311 
  364    UCD015F_D03_BE445431Td02P012C05P025B091F1_025.ab1   315 
  368  C UCD015R_D03_BE445431Td02P012C05P025B091R1_025.ab1   275 
  384    UCD015F_D03_BE445431Td02P012C05P025B091F1_025.ab1   335 
  432  C UCD015R_D03_BE445431Td02P012C05P025B091R1_025.ab1   211 
  488    UCD015F_D03_BE445431Td02P012C05P025B091F1_025.ab1   439 
  496  C UCD015R_D03_BE445431Td02P012C05P025B091R1_025.ab1   147 
  508    UCD015F_D03_BE445431Td02P012C05P025B091F1_025.ab1   459 
  524  C UCD015R_D03_BE445431Td02P012C05P025B091R1_025.ab1   119 
  536    UCD015F_D03_BE445431Td02P012C05P025B091F1_025.ab1   487 
  544  C UCD015R_D03_BE445431Td02P012C05P025B091R1_025.ab1    99 
  552    UCD015F_D03_BE445431Td02P012C05P025B091F1_025.ab1   503 
  560  C UCD015R_D03_BE445431Td02P012C05P025B091R1_025.ab1    83 
  600    UCD015F_D03_BE445431Td02P012C05P025B091F1_025.ab1   551 
Contig length: old 682, new 683

Contig length: old 683, new 683
New start: 0