No. words: 1289; after pruning: 1263


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.5 (1,1:605)  581  0.00 0.33 0.17  UCD015F_E03_BE445431Td03P012C05P025B091F1_023.ab1        1   603 (41)  C UCD015R_E03_BE445431Td03P012C05P025B091R1_023.ab1   (38)   607     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C UCD015R_E03_BE445431Td03P012C05P025B091R1_023.ab1   645 
   91    UCD015F_E03_BE445431Td03P012C05P025B091F1_023.ab1    51 
   95  C UCD015R_E03_BE445431Td03P012C05P025B091R1_023.ab1   551 
  111    UCD015F_E03_BE445431Td03P012C05P025B091F1_023.ab1    71 
  159  C UCD015R_E03_BE445431Td03P012C05P025B091R1_023.ab1   487 
  163    UCD015F_E03_BE445431Td03P012C05P025B091F1_023.ab1   123 
  179  C UCD015R_E03_BE445431Td03P012C05P025B091R1_023.ab1   467 
  211    UCD015F_E03_BE445431Td03P012C05P025B091F1_023.ab1   171 
  283  C UCD015R_E03_BE445431Td03P012C05P025B091R1_023.ab1   363 
  299    UCD015F_E03_BE445431Td03P012C05P025B091F1_023.ab1   259 
  331  C UCD015R_E03_BE445431Td03P012C05P025B091R1_023.ab1   315 
  339    UCD015F_E03_BE445431Td03P012C05P025B091F1_023.ab1   299 
  431  C UCD015R_E03_BE445431Td03P012C05P025B091R1_023.ab1   215 
  487    UCD015F_E03_BE445431Td03P012C05P025B091F1_023.ab1   447 
  527  C UCD015R_E03_BE445431Td03P012C05P025B091R1_023.ab1   119 
  535    UCD015F_E03_BE445431Td03P012C05P025B091F1_023.ab1   495 
  543  C UCD015R_E03_BE445431Td03P012C05P025B091R1_023.ab1   103 
  547    UCD015F_E03_BE445431Td03P012C05P025B091F1_023.ab1   507 
  559  C UCD015R_E03_BE445431Td03P012C05P025B091R1_023.ab1    87 
  567    UCD015F_E03_BE445431Td03P012C05P025B091F1_023.ab1   527 
  571  C UCD015R_E03_BE445431Td03P012C05P025B091R1_023.ab1    75 
  603    UCD015F_E03_BE445431Td03P012C05P025B091F1_023.ab1   563 
Contig length: old 683, new 684

Contig length: old 684, new 684
New start: 0