No. words: 1269; after pruning: 1243


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:580)  562  0.00 0.00 0.34  UCD015F_F03_BE445431Td04P012C05P025B091F1_021.ab1        1   582 (45)  C UCD015R_F03_BE445431Td04P012C05P025B091R1_021.ab1   (62)   580     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1  C UCD015R_F03_BE445431Td04P012C05P025B091R1_021.ab1   642 
   94    UCD015F_F03_BE445431Td04P012C05P025B091F1_021.ab1    32 
   98  C UCD015R_F03_BE445431Td04P012C05P025B091R1_021.ab1   545 
  118    UCD015F_F03_BE445431Td04P012C05P025B091F1_021.ab1    56 
  170  C UCD015R_F03_BE445431Td04P012C05P025B091R1_021.ab1   473 
  210    UCD015F_F03_BE445431Td04P012C05P025B091F1_021.ab1   148 
  278  C UCD015R_F03_BE445431Td04P012C05P025B091R1_021.ab1   365 
  298    UCD015F_F03_BE445431Td04P012C05P025B091F1_021.ab1   236 
  334  C UCD015R_F03_BE445431Td04P012C05P025B091R1_021.ab1   309 
  342    UCD015F_F03_BE445431Td04P012C05P025B091F1_021.ab1   280 
  346  C UCD015R_F03_BE445431Td04P012C05P025B091R1_021.ab1   297 
  366    UCD015F_F03_BE445431Td04P012C05P025B091F1_021.ab1   304 
  370  C UCD015R_F03_BE445431Td04P012C05P025B091R1_021.ab1   273 
  374    UCD015F_F03_BE445431Td04P012C05P025B091F1_021.ab1   312 
  438  C UCD015R_F03_BE445431Td04P012C05P025B091R1_021.ab1   205 
  498    UCD015F_F03_BE445431Td04P012C05P025B091F1_021.ab1   436 
  526  C UCD015R_F03_BE445431Td04P012C05P025B091R1_021.ab1   117 
  538    UCD015F_F03_BE445431Td04P012C05P025B091F1_021.ab1   476 
  566  C UCD015R_F03_BE445431Td04P012C05P025B091R1_021.ab1    77 
  602    UCD015F_F03_BE445431Td04P012C05P025B091F1_021.ab1   540 
Contig length: old 688, new 689

Contig length: old 689, new 689
New start: 0