No. words: 1283; after pruning: 1257


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.6 (1,1:592)  571  0.00 0.34 0.17  UCD015F_G03_BE445431Td05P012C05P025B091F1_019.ab1        1   593 (46)  C UCD015R_G03_BE445431Td05P012C05P025B091R1_019.ab1   (50)   594     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1  C UCD015R_G03_BE445431Td05P012C05P025B091R1_019.ab1   644 
   90    UCD015F_G03_BE445431Td05P012C05P025B091F1_019.ab1    38 
   98  C UCD015R_G03_BE445431Td05P012C05P025B091R1_019.ab1   547 
  154    UCD015F_G03_BE445431Td05P012C05P025B091F1_019.ab1   102 
  186  C UCD015R_G03_BE445431Td05P012C05P025B091R1_019.ab1   459 
  214    UCD015F_G03_BE445431Td05P012C05P025B091F1_019.ab1   162 
  282  C UCD015R_G03_BE445431Td05P012C05P025B091R1_019.ab1   363 
  302    UCD015F_G03_BE445431Td05P012C05P025B091F1_019.ab1   250 
  334  C UCD015R_G03_BE445431Td05P012C05P025B091R1_019.ab1   311 
  394    UCD015F_G03_BE445431Td05P012C05P025B091F1_019.ab1   342 
  434  C UCD015R_G03_BE445431Td05P012C05P025B091R1_019.ab1   211 
  490    UCD015F_G03_BE445431Td05P012C05P025B091F1_019.ab1   438 
  506  C UCD015R_G03_BE445431Td05P012C05P025B091R1_019.ab1   139 
  538    UCD015F_G03_BE445431Td05P012C05P025B091F1_019.ab1   486 
  546  C UCD015R_G03_BE445431Td05P012C05P025B091R1_019.ab1    99 
  554    UCD015F_G03_BE445431Td05P012C05P025B091F1_019.ab1   502 
  562  C UCD015R_G03_BE445431Td05P012C05P025B091R1_019.ab1    83 
  570    UCD015F_G03_BE445431Td05P012C05P025B091F1_019.ab1   518 
  574  C UCD015R_G03_BE445431Td05P012C05P025B091R1_019.ab1    71 
  602    UCD015F_G03_BE445431Td05P012C05P025B091F1_019.ab1   550 
Contig length: old 690, new 691

Contig length: old 691, new 691
New start: 0