No. words: 1285; after pruning: 1259


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.7 (1,1:597)  572  0.00 0.17 0.34  UCD015F_H03_BE445431Td06P012C05P025B091F1_017.ab1        5   599 (42)  C UCD015R_H03_BE445431Td06P012C05P025B091R1_017.ab1   (50)   594     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C UCD015R_H03_BE445431Td06P012C05P025B091R1_017.ab1   644 
   91    UCD015F_H03_BE445431Td06P012C05P025B091F1_017.ab1    44 
   99  C UCD015R_H03_BE445431Td06P012C05P025B091R1_017.ab1   546 
  155    UCD015F_H03_BE445431Td06P012C05P025B091F1_017.ab1   108 
  183  C UCD015R_H03_BE445431Td06P012C05P025B091R1_017.ab1   462 
  215    UCD015F_H03_BE445431Td06P012C05P025B091F1_017.ab1   168 
  283  C UCD015R_H03_BE445431Td06P012C05P025B091R1_017.ab1   362 
  303    UCD015F_H03_BE445431Td06P012C05P025B091F1_017.ab1   256 
  335  C UCD015R_H03_BE445431Td06P012C05P025B091R1_017.ab1   310 
  343    UCD015F_H03_BE445431Td06P012C05P025B091F1_017.ab1   296 
  351  C UCD015R_H03_BE445431Td06P012C05P025B091R1_017.ab1   294 
  367    UCD015F_H03_BE445431Td06P012C05P025B091F1_017.ab1   320 
  371  C UCD015R_H03_BE445431Td06P012C05P025B091R1_017.ab1   274 
  399    UCD015F_H03_BE445431Td06P012C05P025B091F1_017.ab1   352 
  435  C UCD015R_H03_BE445431Td06P012C05P025B091R1_017.ab1   210 
  491    UCD015F_H03_BE445431Td06P012C05P025B091F1_017.ab1   444 
  527  C UCD015R_H03_BE445431Td06P012C05P025B091R1_017.ab1   118 
  539    UCD015F_H03_BE445431Td06P012C05P025B091F1_017.ab1   492 
  547  C UCD015R_H03_BE445431Td06P012C05P025B091R1_017.ab1    98 
  555    UCD015F_H03_BE445431Td06P012C05P025B091F1_017.ab1   508 
  567  C UCD015R_H03_BE445431Td06P012C05P025B091R1_017.ab1    78 
  571    UCD015F_H03_BE445431Td06P012C05P025B091F1_017.ab1   524 
  575  C UCD015R_H03_BE445431Td06P012C05P025B091R1_017.ab1    70 
  607    UCD015F_H03_BE445431Td06P012C05P025B091F1_017.ab1   560 
Contig length: old 687, new 688

Contig length: old 688, new 688
New start: 0