No. words: 1259; after pruning: 1233


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:580)  562  0.00 0.00 0.34  UCD015F_A04_BE445431Td07P012C05P025B091F1_032.ab1        1   582 (34)  C UCD015R_A04_BE445431Td07P012C05P025B091R1_032.ab1   (63)   580     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1  C UCD015R_A04_BE445431Td07P012C05P025B091R1_032.ab1   643 
   95    UCD015F_A04_BE445431Td07P012C05P025B091F1_032.ab1    32 
   99  C UCD015R_A04_BE445431Td07P012C05P025B091R1_032.ab1   545 
  151    UCD015F_A04_BE445431Td07P012C05P025B091F1_032.ab1    88 
  171  C UCD015R_A04_BE445431Td07P012C05P025B091R1_032.ab1   473 
  175    UCD015F_A04_BE445431Td07P012C05P025B091F1_032.ab1   112 
  179  C UCD015R_A04_BE445431Td07P012C05P025B091R1_032.ab1   465 
  211    UCD015F_A04_BE445431Td07P012C05P025B091F1_032.ab1   148 
  287  C UCD015R_A04_BE445431Td07P012C05P025B091R1_032.ab1   357 
  307    UCD015F_A04_BE445431Td07P012C05P025B091F1_032.ab1   244 
  331  C UCD015R_A04_BE445431Td07P012C05P025B091R1_032.ab1   313 
  387    UCD015F_A04_BE445431Td07P012C05P025B091F1_032.ab1   324 
  423  C UCD015R_A04_BE445431Td07P012C05P025B091R1_032.ab1   221 
  495    UCD015F_A04_BE445431Td07P012C05P025B091F1_032.ab1   432 
  499  C UCD015R_A04_BE445431Td07P012C05P025B091R1_032.ab1   145 
  539    UCD015F_A04_BE445431Td07P012C05P025B091F1_032.ab1   476 
  543  C UCD015R_A04_BE445431Td07P012C05P025B091R1_032.ab1   101 
  611    UCD015F_A04_BE445431Td07P012C05P025B091F1_032.ab1   548 
  628  C UCD015R_A04_BE445431Td07P012C05P025B091R1_032.ab1    17 
  636    UCD015F_A04_BE445431Td07P012C05P025B091F1_032.ab1   573 
Contig length: old 678, new 679

Contig length: old 679, new 679
New start: 0