No. words: 1286; after pruning: 1260


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 12.3 (1,1:597)  577  0.00 0.17 0.00  UCD015F_B04_BE445431Td08P012C05P025B091F1_030.ab1        1   590 (48)  C UCD015R_B04_BE445431Td08P012C05P025B091R1_030.ab1   (49)   599     9 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C UCD015R_B04_BE445431Td08P012C05P025B091R1_030.ab1   648 
  132    UCD015F_B04_BE445431Td08P012C05P025B091F1_030.ab1    82 
  136  C UCD015R_B04_BE445431Td08P012C05P025B091R1_030.ab1   513 
  212    UCD015F_B04_BE445431Td08P012C05P025B091F1_030.ab1   162 
  248  C UCD015R_B04_BE445431Td08P012C05P025B091R1_030.ab1   401 
  252    UCD015F_B04_BE445431Td08P012C05P025B091F1_030.ab1   202 
  256  C UCD015R_B04_BE445431Td08P012C05P025B091R1_030.ab1   393 
  268    UCD015F_B04_BE445431Td08P012C05P025B091F1_030.ab1   218 
  288  C UCD015R_B04_BE445431Td08P012C05P025B091R1_030.ab1   361 
  308    UCD015F_B04_BE445431Td08P012C05P025B091F1_030.ab1   258 
  352  C UCD015R_B04_BE445431Td08P012C05P025B091R1_030.ab1   297 
  360    UCD015F_B04_BE445431Td08P012C05P025B091F1_030.ab1   310 
  432  C UCD015R_B04_BE445431Td08P012C05P025B091R1_030.ab1   217 
  436    UCD015F_B04_BE445431Td08P012C05P025B091F1_030.ab1   386 
Contig length: old 688, new 688

Contig length: old 688, new 688
New start: 0