No. words: 1267; after pruning: 1241


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.8 (1,1:578)  570  0.00 0.00 0.00  UCD015F_C04_BE445431Td09P012C05P025B091F1_028.ab1        1   579 (56)  C UCD015R_C04_BE445431Td09P012C05P025B091R1_028.ab1   (53)   579     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C UCD015R_C04_BE445431Td09P012C05P025B091R1_028.ab1   632 
   89    UCD015F_C04_BE445431Td09P012C05P025B091F1_028.ab1    36 
  105  C UCD015R_C04_BE445431Td09P012C05P025B091R1_028.ab1   528 
  121    UCD015F_C04_BE445431Td09P012C05P025B091F1_028.ab1    68 
  149  C UCD015R_C04_BE445431Td09P012C05P025B091R1_028.ab1   484 
  157    UCD015F_C04_BE445431Td09P012C05P025B091F1_028.ab1   104 
  161  C UCD015R_C04_BE445431Td09P012C05P025B091R1_028.ab1   472 
  165    UCD015F_C04_BE445431Td09P012C05P025B091F1_028.ab1   112 
  181  C UCD015R_C04_BE445431Td09P012C05P025B091R1_028.ab1   452 
  213    UCD015F_C04_BE445431Td09P012C05P025B091F1_028.ab1   160 
  293  C UCD015R_C04_BE445431Td09P012C05P025B091R1_028.ab1   340 
  301    UCD015F_C04_BE445431Td09P012C05P025B091F1_028.ab1   248 
  433  C UCD015R_C04_BE445431Td09P012C05P025B091R1_028.ab1   200 
  489    UCD015F_C04_BE445431Td09P012C05P025B091F1_028.ab1   436 
  525  C UCD015R_C04_BE445431Td09P012C05P025B091R1_028.ab1   108 
  537    UCD015F_C04_BE445431Td09P012C05P025B091F1_028.ab1   484 
  565  C UCD015R_C04_BE445431Td09P012C05P025B091R1_028.ab1    68 
  605    UCD015F_C04_BE445431Td09P012C05P025B091F1_028.ab1   552 
Contig length: old 688, new 688

Contig length: old 688, new 688
New start: 0