No. words: 1284; after pruning: 1258


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.6 (1,1:598)  578  0.00 0.17 0.17  UCD015F_D04_BE445431Td10P012C05P025B091F1_026.ab1        1   596 (39)  C UCD015R_D04_BE445431Td10P012C05P025B091R1_026.ab1   (50)   599     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C UCD015R_D04_BE445431Td10P012C05P025B091R1_026.ab1   649 
   91    UCD015F_D04_BE445431Td10P012C05P025B091F1_026.ab1    40 
   95  C UCD015R_D04_BE445431Td10P012C05P025B091R1_026.ab1   555 
  107    UCD015F_D04_BE445431Td10P012C05P025B091F1_026.ab1    56 
  111  C UCD015R_D04_BE445431Td10P012C05P025B091R1_026.ab1   539 
  143    UCD015F_D04_BE445431Td10P012C05P025B091F1_026.ab1    92 
  151  C UCD015R_D04_BE445431Td10P012C05P025B091R1_026.ab1   499 
  155    UCD015F_D04_BE445431Td10P012C05P025B091F1_026.ab1   104 
  163  C UCD015R_D04_BE445431Td10P012C05P025B091R1_026.ab1   487 
  167    UCD015F_D04_BE445431Td10P012C05P025B091F1_026.ab1   116 
  171  C UCD015R_D04_BE445431Td10P012C05P025B091R1_026.ab1   479 
  215    UCD015F_D04_BE445431Td10P012C05P025B091F1_026.ab1   164 
  279  C UCD015R_D04_BE445431Td10P012C05P025B091R1_026.ab1   371 
  303    UCD015F_D04_BE445431Td10P012C05P025B091F1_026.ab1   252 
  335  C UCD015R_D04_BE445431Td10P012C05P025B091R1_026.ab1   315 
  367    UCD015F_D04_BE445431Td10P012C05P025B091F1_026.ab1   316 
  371  C UCD015R_D04_BE445431Td10P012C05P025B091R1_026.ab1   279 
  491    UCD015F_D04_BE445431Td10P012C05P025B091F1_026.ab1   440 
  511  C UCD015R_D04_BE445431Td10P012C05P025B091R1_026.ab1   139 
  539    UCD015F_D04_BE445431Td10P012C05P025B091F1_026.ab1   488 
  547  C UCD015R_D04_BE445431Td10P012C05P025B091R1_026.ab1   103 
  555    UCD015F_D04_BE445431Td10P012C05P025B091F1_026.ab1   504 
  563  C UCD015R_D04_BE445431Td10P012C05P025B091R1_026.ab1    87 
  607    UCD015F_D04_BE445431Td10P012C05P025B091F1_026.ab1   556 
Contig length: old 685, new 686

Contig length: old 686, new 686
New start: 0