No. words: 1042; after pruning: 1016


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.1 (1,1:461)  439  0.00 0.22 0.00  UCD023F_C08_BE446480AS01P028F05P028F111F1_060.ab1        5   462 (55)  C UCD023R_C08_BE446480AS01P028F05P028F111R1_060.ab1   (66)   459     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C UCD023R_C08_BE446480AS01P028F05P028F111R1_060.ab1   525 
  236    UCD023F_C08_BE446480AS01P028F05P028F111F1_060.ab1   173 
  244  C UCD023R_C08_BE446480AS01P028F05P028F111R1_060.ab1   282 
  400    UCD023F_C08_BE446480AS01P028F05P028F111F1_060.ab1   337 
  408  C UCD023R_C08_BE446480AS01P028F05P028F111R1_060.ab1   118 
  420    UCD023F_C08_BE446480AS01P028F05P028F111F1_060.ab1   357 
  424  C UCD023R_C08_BE446480AS01P028F05P028F111R1_060.ab1   102 
  428    UCD023F_C08_BE446480AS01P028F05P028F111F1_060.ab1   365 
  432  C UCD023R_C08_BE446480AS01P028F05P028F111R1_060.ab1    94 
  452    UCD023F_C08_BE446480AS01P028F05P028F111F1_060.ab1   389 
  456  C UCD023R_C08_BE446480AS01P028F05P028F111R1_060.ab1    70 
  464    UCD023F_C08_BE446480AS01P028F05P028F111F1_060.ab1   401 
  468  C UCD023R_C08_BE446480AS01P028F05P028F111R1_060.ab1    58 
  496    UCD023F_C08_BE446480AS01P028F05P028F111F1_060.ab1   433 
Contig length: old 580, new 580

Contig length: old 580, new 580
New start: 0