No. words: 1036; after pruning: 1010


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.1 (1,1:461)  435  0.00 0.43 0.00  UCD023F_D08_BE446480AS02P028F05P028F111F1_058.ab1        2   461 (58)  C UCD023R_D08_BE446480AS02P028F05P028F111R1_058.ab1   (55)   462     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C UCD023R_D08_BE446480AS02P028F05P028F111R1_058.ab1   517 
   88    UCD023F_D08_BE446480AS02P028F05P028F111F1_058.ab1    32 
   92  C UCD023R_D08_BE446480AS02P028F05P028F111R1_058.ab1   426 
  104    UCD023F_D08_BE446480AS02P028F05P028F111F1_058.ab1    48 
  120  C UCD023R_D08_BE446480AS02P028F05P028F111R1_058.ab1   398 
  124    UCD023F_D08_BE446480AS02P028F05P028F111F1_058.ab1    68 
  144  C UCD023R_D08_BE446480AS02P028F05P028F111R1_058.ab1   374 
  152    UCD023F_D08_BE446480AS02P028F05P028F111F1_058.ab1    96 
  156  C UCD023R_D08_BE446480AS02P028F05P028F111R1_058.ab1   362 
  160    UCD023F_D08_BE446480AS02P028F05P028F111F1_058.ab1   104 
  180  C UCD023R_D08_BE446480AS02P028F05P028F111R1_058.ab1   338 
  188    UCD023F_D08_BE446480AS02P028F05P028F111F1_058.ab1   132 
  300  C UCD023R_D08_BE446480AS02P028F05P028F111R1_058.ab1   218 
  304    UCD023F_D08_BE446480AS02P028F05P028F111F1_058.ab1   248 
  324  C UCD023R_D08_BE446480AS02P028F05P028F111R1_058.ab1   194 
  392    UCD023F_D08_BE446480AS02P028F05P028F111F1_058.ab1   336 
  396  C UCD023R_D08_BE446480AS02P028F05P028F111R1_058.ab1   122 
  408    UCD023F_D08_BE446480AS02P028F05P028F111F1_058.ab1   352 
  420  C UCD023R_D08_BE446480AS02P028F05P028F111R1_058.ab1    98 
  428    UCD023F_D08_BE446480AS02P028F05P028F111F1_058.ab1   372 
  444  C UCD023R_D08_BE446480AS02P028F05P028F111R1_058.ab1    74 
  452    UCD023F_D08_BE446480AS02P028F05P028F111F1_058.ab1   396 
  468  C UCD023R_D08_BE446480AS02P028F05P028F111R1_058.ab1    50 
  484    UCD023F_D08_BE446480AS02P028F05P028F111F1_058.ab1   428 
Contig length: old 574, new 575

Contig length: old 575, new 575
New start: 0