No. words: 1070; after pruning: 1044


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.7 (1,1:480)  461  0.00 0.00 0.00  UCD023F_E08_BE446480AT01P028F05P028F111F1_056.ab1        1   481 (51)  C UCD023R_E08_BE446480AT01P028F05P028F111R1_056.ab1   (57)   481     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C UCD023R_E08_BE446480AT01P028F05P028F111R1_056.ab1   538 
  109    UCD023F_E08_BE446480AT01P028F05P028F111F1_056.ab1    52 
  133  C UCD023R_E08_BE446480AT01P028F05P028F111R1_056.ab1   406 
  169    UCD023F_E08_BE446480AT01P028F05P028F111F1_056.ab1   112 
  173  C UCD023R_E08_BE446480AT01P028F05P028F111R1_056.ab1   366 
  309    UCD023F_E08_BE446480AT01P028F05P028F111F1_056.ab1   252 
  313  C UCD023R_E08_BE446480AT01P028F05P028F111R1_056.ab1   226 
  393    UCD023F_E08_BE446480AT01P028F05P028F111F1_056.ab1   336 
  397  C UCD023R_E08_BE446480AT01P028F05P028F111R1_056.ab1   142 
  437    UCD023F_E08_BE446480AT01P028F05P028F111F1_056.ab1   380 
  441  C UCD023R_E08_BE446480AT01P028F05P028F111R1_056.ab1    98 
  457    UCD023F_E08_BE446480AT01P028F05P028F111F1_056.ab1   400 
  461  C UCD023R_E08_BE446480AT01P028F05P028F111R1_056.ab1    78 
  477    UCD023F_E08_BE446480AT01P028F05P028F111F1_056.ab1   420 
  485  C UCD023R_E08_BE446480AT01P028F05P028F111R1_056.ab1    54 
  513    UCD023F_E08_BE446480AT01P028F05P028F111F1_056.ab1   456 
  517  C UCD023R_E08_BE446480AT01P028F05P028F111R1_056.ab1    22 
  525    UCD023F_E08_BE446480AT01P028F05P028F111F1_056.ab1   468 
Contig length: old 589, new 589

Contig length: old 589, new 589
New start: 0