No. words: 1069; after pruning: 1043


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.6 (1,1:479)  459  0.00 0.00 0.00  UCD023F_F08_BE446480AT02P028F05P028F111F1_054.ab1        1   480 (53)  C UCD023R_F08_BE446480AT02P028F05P028F111R1_054.ab1   (56)   480     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C UCD023R_F08_BE446480AT02P028F05P028F111R1_054.ab1   536 
   68    UCD023F_F08_BE446480AT02P028F05P028F111F1_054.ab1    12 
   80  C UCD023R_F08_BE446480AT02P028F05P028F111R1_054.ab1   457 
   92    UCD023F_F08_BE446480AT02P028F05P028F111F1_054.ab1    36 
  148  C UCD023R_F08_BE446480AT02P028F05P028F111R1_054.ab1   389 
  152    UCD023F_F08_BE446480AT02P028F05P028F111F1_054.ab1    96 
  160  C UCD023R_F08_BE446480AT02P028F05P028F111R1_054.ab1   377 
  168    UCD023F_F08_BE446480AT02P028F05P028F111F1_054.ab1   112 
  216  C UCD023R_F08_BE446480AT02P028F05P028F111R1_054.ab1   321 
  224    UCD023F_F08_BE446480AT02P028F05P028F111F1_054.ab1   168 
  232  C UCD023R_F08_BE446480AT02P028F05P028F111R1_054.ab1   305 
  392    UCD023F_F08_BE446480AT02P028F05P028F111F1_054.ab1   336 
  396  C UCD023R_F08_BE446480AT02P028F05P028F111R1_054.ab1   141 
  400    UCD023F_F08_BE446480AT02P028F05P028F111F1_054.ab1   344 
  404  C UCD023R_F08_BE446480AT02P028F05P028F111R1_054.ab1   133 
  436    UCD023F_F08_BE446480AT02P028F05P028F111F1_054.ab1   380 
  440  C UCD023R_F08_BE446480AT02P028F05P028F111R1_054.ab1    97 
  476    UCD023F_F08_BE446480AT02P028F05P028F111F1_054.ab1   420 
  480  C UCD023R_F08_BE446480AT02P028F05P028F111R1_054.ab1    57 
  532    UCD023F_F08_BE446480AT02P028F05P028F111F1_054.ab1   476 
Contig length: old 589, new 589

Contig length: old 589, new 589
New start: 0