No. words: 1129; after pruning: 1103


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 8.1 (1,1:477)  436  0.43 0.22 0.00  UCD023F_A09_BE446480LD03P028F05P028F111F1_079.ab1        1   464 (2)  C UCD023R_A09_BE446480LD03P028F05P028F111R1_079.ab1   (184)   479    15 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C UCD023R_A09_BE446480LD03P028F05P028F111R1_079.ab1   663 
  360    UCD023F_A09_BE446480LD03P028F05P028F111F1_079.ab1   175 
  368  C UCD023R_A09_BE446480LD03P028F05P028F111R1_079.ab1   296 
  428    UCD023F_A09_BE446480LD03P028F05P028F111F1_079.ab1   243 
  432  C UCD023R_A09_BE446480LD03P028F05P028F111R1_079.ab1   232 
Contig length: old 663, new 663

Contig length: old 663, new 663
New start: 0