No. words: 1277; after pruning: 1251


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.9 (1,1:466)  442  0.00 0.22 0.00  UCD023F_B09_BE446480LD04P028F05P028F111F1_077.ab1        5   467 (153)  C UCD023R_B09_BE446480LD04P028F05P028F111R1_077.ab1   (193)   464     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C UCD023R_B09_BE446480LD04P028F05P028F111R1_077.ab1   657 
  224    UCD023F_B09_BE446480LD04P028F05P028F111F1_077.ab1    34 
  228  C UCD023R_B09_BE446480LD04P028F05P028F111R1_077.ab1   430 
  248    UCD023F_B09_BE446480LD04P028F05P028F111F1_077.ab1    58 
  256  C UCD023R_B09_BE446480LD04P028F05P028F111R1_077.ab1   402 
  324    UCD023F_B09_BE446480LD04P028F05P028F111F1_077.ab1   134 
  356  C UCD023R_B09_BE446480LD04P028F05P028F111R1_077.ab1   302 
  548    UCD023F_B09_BE446480LD04P028F05P028F111F1_077.ab1   358 
  552  C UCD023R_B09_BE446480LD04P028F05P028F111R1_077.ab1   106 
  556    UCD023F_B09_BE446480LD04P028F05P028F111F1_077.ab1   366 
  560  C UCD023R_B09_BE446480LD04P028F05P028F111R1_077.ab1    98 
  576    UCD023F_B09_BE446480LD04P028F05P028F111F1_077.ab1   386 
  580  C UCD023R_B09_BE446480LD04P028F05P028F111R1_077.ab1    78 
  604    UCD023F_B09_BE446480LD04P028F05P028F111F1_077.ab1   414 
  608  C UCD023R_B09_BE446480LD04P028F05P028F111R1_077.ab1    50 
  644    UCD023F_B09_BE446480LD04P028F05P028F111F1_077.ab1   454 
Contig length: old 810, new 810

Contig length: old 810, new 810
New start: 0