No. words: 1282; after pruning: 1256


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:474)  448  0.00 0.42 0.00  UCD023F_E09_BE446480LD07P028F05P028F111F1_071.ab1        1   474 (147)  C UCD023R_E09_BE446480LD07P028F05P028F111R1_071.ab1   (185)   476     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C UCD023R_E09_BE446480LD07P028F05P028F111R1_071.ab1   661 
  222    UCD023F_E09_BE446480LD07P028F05P028F111F1_071.ab1    35 
  226  C UCD023R_E09_BE446480LD07P028F05P028F111R1_071.ab1   436 
  238    UCD023F_E09_BE446480LD07P028F05P028F111F1_071.ab1    51 
  254  C UCD023R_E09_BE446480LD07P028F05P028F111R1_071.ab1   408 
  262    UCD023F_E09_BE446480LD07P028F05P028F111F1_071.ab1    75 
  278  C UCD023R_E09_BE446480LD07P028F05P028F111R1_071.ab1   384 
  318    UCD023F_E09_BE446480LD07P028F05P028F111F1_071.ab1   131 
  358  C UCD023R_E09_BE446480LD07P028F05P028F111R1_071.ab1   304 
  382    UCD023F_E09_BE446480LD07P028F05P028F111F1_071.ab1   195 
  390  C UCD023R_E09_BE446480LD07P028F05P028F111R1_071.ab1   272 
  554    UCD023F_E09_BE446480LD07P028F05P028F111F1_071.ab1   367 
  558  C UCD023R_E09_BE446480LD07P028F05P028F111R1_071.ab1   104 
  618    UCD023F_E09_BE446480LD07P028F05P028F111F1_071.ab1   431 
Contig length: old 807, new 808

Contig length: old 808, new 808
New start: 0