No. words: 1261; after pruning: 1235


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:470)  448  0.00 0.21 0.00  UCD023F_F09_BE446480LD08P028F05P028F111F1_069.ab1        1   471 (144)  C UCD023R_F09_BE446480LD08P028F05P028F111R1_069.ab1   (174)   472     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C UCD023R_F09_BE446480LD08P028F05P028F111R1_069.ab1   646 
  214    UCD023F_F09_BE446480LD08P028F05P028F111F1_069.ab1    39 
  218  C UCD023R_F09_BE446480LD08P028F05P028F111R1_069.ab1   429 
  230    UCD023F_F09_BE446480LD08P028F05P028F111F1_069.ab1    55 
  278  C UCD023R_F09_BE446480LD08P028F05P028F111R1_069.ab1   369 
  314    UCD023F_F09_BE446480LD08P028F05P028F111F1_069.ab1   139 
  322  C UCD023R_F09_BE446480LD08P028F05P028F111R1_069.ab1   325 
  498    UCD023F_F09_BE446480LD08P028F05P028F111F1_069.ab1   323 
  506  C UCD023R_F09_BE446480LD08P028F05P028F111R1_069.ab1   141 
  526    UCD023F_F09_BE446480LD08P028F05P028F111F1_069.ab1   351 
  550  C UCD023R_F09_BE446480LD08P028F05P028F111R1_069.ab1    97 
  562    UCD023F_F09_BE446480LD08P028F05P028F111F1_069.ab1   387 
  570  C UCD023R_F09_BE446480LD08P028F05P028F111R1_069.ab1    77 
  582    UCD023F_F09_BE446480LD08P028F05P028F111F1_069.ab1   407 
  598  C UCD023R_F09_BE446480LD08P028F05P028F111R1_069.ab1    49 
  610    UCD023F_F09_BE446480LD08P028F05P028F111F1_069.ab1   435 
  614  C UCD023R_F09_BE446480LD08P028F05P028F111R1_069.ab1    33 
  618    UCD023F_F09_BE446480LD08P028F05P028F111F1_069.ab1   443 
Contig length: old 790, new 790

Contig length: old 790, new 790
New start: 0