No. words: 1170; after pruning: 1144


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:475)  446  0.42 0.21 0.00  UCD023F_H09_BE446480LD10P028F05P028F111F1_065.ab1        1   476 (33)  C UCD023R_H09_BE446480LD10P028F05P028F111R1_065.ab1   (184)   477     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C UCD023R_H09_BE446480LD10P028F05P028F111R1_065.ab1   661 
  323    UCD023F_H09_BE446480LD10P028F05P028F111F1_065.ab1   138 
  331  C UCD023R_H09_BE446480LD10P028F05P028F111R1_065.ab1   331 
  658    UCD023F_H09_BE446480LD10P028F05P028F111F1_065.ab1   473 
Contig length: old 694, new 694

Contig length: old 694, new 694
New start: 0 
S Change at: 311; seg lengths: entry 1, contig 1