No. words: 1188; after pruning: 1162


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:456)  439  0.00 0.00 0.00  UCD023F_B11_BE446480LD12P028F05P028F111F1_093.ab1        1   457 (141)  C UCD023R_B11_BE446480LD12P028F05P028F111R1_093.ab1   (133)   457     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C UCD023R_B11_BE446480LD12P028F05P028F111R1_093.ab1   590 
  161    UCD023F_B11_BE446480LD12P028F05P028F111F1_093.ab1    28 
  169  C UCD023R_B11_BE446480LD12P028F05P028F111R1_093.ab1   422 
  173    UCD023F_B11_BE446480LD12P028F05P028F111F1_093.ab1    40 
  181  C UCD023R_B11_BE446480LD12P028F05P028F111R1_093.ab1   410 
  185    UCD023F_B11_BE446480LD12P028F05P028F111F1_093.ab1    52 
  197  C UCD023R_B11_BE446480LD12P028F05P028F111R1_093.ab1   394 
  201    UCD023F_B11_BE446480LD12P028F05P028F111F1_093.ab1    68 
  205  C UCD023R_B11_BE446480LD12P028F05P028F111R1_093.ab1   386 
  209    UCD023F_B11_BE446480LD12P028F05P028F111F1_093.ab1    76 
  213  C UCD023R_B11_BE446480LD12P028F05P028F111R1_093.ab1   378 
  237    UCD023F_B11_BE446480LD12P028F05P028F111F1_093.ab1   104 
  269  C UCD023R_B11_BE446480LD12P028F05P028F111R1_093.ab1   322 
  285    UCD023F_B11_BE446480LD12P028F05P028F111F1_093.ab1   152 
Contig length: old 731, new 731

Contig length: old 731, new 731
New start: 0