No. words: 1146; after pruning: 1120


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.5 (1,1:466)  440  0.00 0.43 0.00  UCD023F_C11_BE446480LD13P028F05P028F111F1_091.ab1        1   466 (155)  C UCD023R_C11_BE446480LD13P028F05P028F111R1_091.ab1   (57)   468     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C UCD023R_C11_BE446480LD13P028F05P028F111R1_091.ab1   525 
   78    UCD023F_C11_BE446480LD13P028F05P028F111F1_091.ab1    19 
  102  C UCD023R_C11_BE446480LD13P028F05P028F111R1_091.ab1   424 
  110    UCD023F_C11_BE446480LD13P028F05P028F111F1_091.ab1    51 
  126  C UCD023R_C11_BE446480LD13P028F05P028F111R1_091.ab1   400 
  130    UCD023F_C11_BE446480LD13P028F05P028F111F1_091.ab1    71 
  186  C UCD023R_C11_BE446480LD13P028F05P028F111R1_091.ab1   340 
  190    UCD023F_C11_BE446480LD13P028F05P028F111F1_091.ab1   131 
  290  C UCD023R_C11_BE446480LD13P028F05P028F111R1_091.ab1   236 
  302    UCD023F_C11_BE446480LD13P028F05P028F111F1_091.ab1   243 
  306  C UCD023R_C11_BE446480LD13P028F05P028F111R1_091.ab1   220 
  406    UCD023F_C11_BE446480LD13P028F05P028F111F1_091.ab1   347 
  414  C UCD023R_C11_BE446480LD13P028F05P028F111R1_091.ab1   112 
  418    UCD023F_C11_BE446480LD13P028F05P028F111F1_091.ab1   359 
  422  C UCD023R_C11_BE446480LD13P028F05P028F111R1_091.ab1   104 
  426    UCD023F_C11_BE446480LD13P028F05P028F111F1_091.ab1   367 
  450  C UCD023R_C11_BE446480LD13P028F05P028F111R1_091.ab1    76 
  458    UCD023F_C11_BE446480LD13P028F05P028F111F1_091.ab1   399 
  466  C UCD023R_C11_BE446480LD13P028F05P028F111R1_091.ab1    60 
  470    UCD023F_C11_BE446480LD13P028F05P028F111F1_091.ab1   411 
  486  C UCD023R_C11_BE446480LD13P028F05P028F111R1_091.ab1    40 
  494    UCD023F_C11_BE446480LD13P028F05P028F111F1_091.ab1   435 
Contig length: old 679, new 680

Contig length: old 680, new 680
New start: 0