No. words: 1276; after pruning: 1250


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:479)  456  0.00 0.21 0.00  UCD023F_D11_BE446480LD14P028F05P028F111F1_089.ab1        1   480 (134)  C UCD023R_D11_BE446480LD14P028F05P028F111R1_089.ab1   (181)   481     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C UCD023R_D11_BE446480LD14P028F05P028F111R1_089.ab1   662 
  224    UCD023F_D11_BE446480LD14P028F05P028F111F1_089.ab1    42 
  228  C UCD023R_D11_BE446480LD14P028F05P028F111R1_089.ab1   435 
  240    UCD023F_D11_BE446480LD14P028F05P028F111F1_089.ab1    58 
  280  C UCD023R_D11_BE446480LD14P028F05P028F111R1_089.ab1   383 
  312    UCD023F_D11_BE446480LD14P028F05P028F111F1_089.ab1   130 
Contig length: old 796, new 796

Contig length: old 796, new 796
New start: 0