No. words: 1525; after pruning: 1499


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:978)  528  0.00 0.18 0.00  UCD002F_F08_BE488220AS01P001B03B091F1_063.ab1      233   777 (0)  C UCD002R_F08_BE488220AS01P001B03B091R1_063.ab1   (0)   748   203 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1    UCD002F_F08_BE488220AS01P001B03B091F1_063.ab1     1 
  428  C UCD002R_F08_BE488220AS01P001B03B091R1_063.ab1   553 
  444    UCD002F_F08_BE488220AS01P001B03B091F1_063.ab1   444 
  448  C UCD002R_F08_BE488220AS01P001B03B091R1_063.ab1   533 
  452    UCD002F_F08_BE488220AS01P001B03B091F1_063.ab1   452 
  456  C UCD002R_F08_BE488220AS01P001B03B091R1_063.ab1   525 
  532    UCD002F_F08_BE488220AS01P001B03B091F1_063.ab1   532 
  536  C UCD002R_F08_BE488220AS01P001B03B091R1_063.ab1   445 
  544    UCD002F_F08_BE488220AS01P001B03B091F1_063.ab1   544 
  548  C UCD002R_F08_BE488220AS01P001B03B091R1_063.ab1   433 
  580    UCD002F_F08_BE488220AS01P001B03B091F1_063.ab1   580 
  584  C UCD002R_F08_BE488220AS01P001B03B091R1_063.ab1   397 
Contig length: old 979, new 980

Contig length: old 980, new 980
New start: 0