No. words: 1426; after pruning: 1400


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.6 (1,1:1037)  381  0.00 0.00 0.00  UCD006R_D01_BE488220AS01P001B03P001B091F1_009.ab1      294   681 (0)  C UCD006F_D01_BE488220AS01P001B03P001B091F1_009.ab1   (0)   745   358 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  196 nodes

 100 str. conn. components

Path
    1    UCD006R_D01_BE488220AS01P001B03P001B091F1_009.ab1     1 
  497  C UCD006F_D01_BE488220AS01P001B03P001B091F1_009.ab1   542 
  505    UCD006R_D01_BE488220AS01P001B03P001B091F1_009.ab1   505 
  509  C UCD006F_D01_BE488220AS01P001B03P001B091F1_009.ab1   530 
  513    UCD006R_D01_BE488220AS01P001B03P001B091F1_009.ab1   513 
  521  C UCD006F_D01_BE488220AS01P001B03P001B091F1_009.ab1   518 
Contig length: old 1038, new 1038

Contig length: old 1038, new 1038
New start: 0