No. words: 1333; after pruning: 1307


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.4 (1,1:971)  339  1.11 0.00 0.28  UCD002F_G08_BE488220AS02P001B03B091F1_056.ab1      211   571 (0)  C UCD002R_G08_BE488220AS02P001B03B091R1_056.ab1   (0)   762   403 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  160 nodes

 82 str. conn. components

Path
    1    UCD002F_G08_BE488220AS02P001B03B091F1_056.ab1     1 
  271  C UCD002R_G08_BE488220AS02P001B03B091R1_056.ab1   702 
  275    UCD002F_G08_BE488220AS02P001B03B091F1_056.ab1   275 
  279  C UCD002R_G08_BE488220AS02P001B03B091R1_056.ab1   694 
  295    UCD002F_G08_BE488220AS02P001B03B091F1_056.ab1   295 
  314  C UCD002R_G08_BE488220AS02P001B03B091R1_056.ab1   660 
  318    UCD002F_G08_BE488220AS02P001B03B091F1_056.ab1   318 
  330  C UCD002R_G08_BE488220AS02P001B03B091R1_056.ab1   644 
  364    UCD002F_G08_BE488220AS02P001B03B091F1_056.ab1   364 
  372  C UCD002R_G08_BE488220AS02P001B03B091R1_056.ab1   602 
Contig length: old 972, new 973

Contig length: old 973, new 973
New start: 0