No. words: 1386; after pruning: 1360


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.1 (1,1:1021)  358  0.00 0.00 0.00  UCD006R_E01_BE488220AS02P001B03P001B091F1_007.ab1      307   670 (0)  C UCD006F_E01_BE488220AS02P001B03P001B091F1_007.ab1   (0)   716   353 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  184 nodes

 94 str. conn. components

Path
    1    UCD006R_E01_BE488220AS02P001B03P001B091F1_007.ab1     1 
  490  C UCD006F_E01_BE488220AS02P001B03P001B091F1_007.ab1   533 
  506    UCD006R_E01_BE488220AS02P001B03P001B091F1_007.ab1   506 
  518  C UCD006F_E01_BE488220AS02P001B03P001B091F1_007.ab1   505 
  558    UCD006R_E01_BE488220AS02P001B03P001B091F1_007.ab1   558 
  562  C UCD006F_E01_BE488220AS02P001B03P001B091F1_007.ab1   461 
Contig length: old 1022, new 1022

Contig length: old 1022, new 1022
New start: 0