No. words: 1465; after pruning: 1439


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:1069)  392  0.00 0.00 0.00  UCD002F_D08_BE488220AT01P001B03B091F1_062.ab1      243   637 (0)  C UCD002R_D08_BE488220AT01P001B03B091R1_062.ab1   (0)   828   434 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  198 nodes

 101 str. conn. components

Path
    1    UCD002F_D08_BE488220AT01P001B03B091F1_062.ab1     1 
  466  C UCD002R_D08_BE488220AT01P001B03B091R1_062.ab1   605 
  470    UCD002F_D08_BE488220AT01P001B03B091F1_062.ab1   470 
  478  C UCD002R_D08_BE488220AT01P001B03B091R1_062.ab1   593 
  486    UCD002F_D08_BE488220AT01P001B03B091F1_062.ab1   486 
  506  C UCD002R_D08_BE488220AT01P001B03B091R1_062.ab1   565 
  514    UCD002F_D08_BE488220AT01P001B03B091F1_062.ab1   514 
  522  C UCD002R_D08_BE488220AT01P001B03B091R1_062.ab1   549 
Contig length: old 1070, new 1070

Contig length: old 1070, new 1070
New start: 0