No. words: 1584; after pruning: 1544


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:955)  606  0.48 0.00 0.00  UCD006R_F01_BE488220AT01P001B03P001B091F1_005.ab1      216   843 (0)  C UCD006F_F01_BE488220AT01P001B03P001B091F1_005.ab1   (0)   741   114 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1    UCD006R_F01_BE488220AT01P001B03P001B091F1_005.ab1     1 
  424  C UCD006F_F01_BE488220AT01P001B03P001B091F1_005.ab1   533 
  456    UCD006R_F01_BE488220AT01P001B03P001B091F1_005.ab1   456 
  480  C UCD006F_F01_BE488220AT01P001B03P001B091F1_005.ab1   477 
  500    UCD006R_F01_BE488220AT01P001B03P001B091F1_005.ab1   500 
  512  C UCD006F_F01_BE488220AT01P001B03P001B091F1_005.ab1   445 
Contig length: old 956, new 956

Contig length: old 956, new 956
New start: 0