No. words: 1505; after pruning: 1465


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:945)  536  0.18 0.00 0.36  UCD006R_A02_BE488220LD02P001B03P001B091F1_016.ab1      172   731 (0)  C UCD006F_A02_BE488220LD02P001B03P001B091F1_016.ab1   (0)   774   217 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1    UCD006R_A02_BE488220LD02P001B03P001B091F1_016.ab1     1 
  502  C UCD006F_A02_BE488220LD02P001B03P001B091F1_016.ab1   446 
  518    UCD006R_A02_BE488220LD02P001B03P001B091F1_016.ab1   518 
  522  C UCD006F_A02_BE488220LD02P001B03P001B091F1_016.ab1   426 
  526    UCD006R_A02_BE488220LD02P001B03P001B091F1_016.ab1   526 
  530  C UCD006F_A02_BE488220LD02P001B03P001B091F1_016.ab1   418 
  578    UCD006R_A02_BE488220LD02P001B03P001B091F1_016.ab1   578 
  582  C UCD006F_A02_BE488220LD02P001B03P001B091F1_016.ab1   366 
Contig length: old 946, new 947

Contig length: old 947, new 947
New start: 0