No. words: 393; after pruning: 367


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    1   -1.1 -1.1 (1,1:53)   43  0.00 1.89 1.89  UCD002F_B09_BE488220LD03P001B03B091F1_073.ab1        1    53 (109)  C UCD002R_B09_BE488220LD03P001B03B091R1_073.ab1   (178)    53     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.1       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  22 nodes

 13 str. conn. components

Path
    1  C UCD002R_B09_BE488220LD03P001B03B091R1_073.ab1   231 
  199    UCD002F_B09_BE488220LD03P001B03B091F1_073.ab1    22 
Contig length: old 339, new 339

Contig length: old 339, new 339
New start: 0