No. words: 1646; after pruning: 1606


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.1 (1,1:948)  671  0.14 0.00 0.29  UCD006R_B02_BE488220LD03P001B03P001B091F1_014.ab1      115   812 (0)  C UCD006F_B02_BE488220LD03P001B03P001B091F1_014.ab1   (0)   834   139 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1    UCD006R_B02_BE488220LD03P001B03P001B091F1_014.ab1     1 
  490  C UCD006F_B02_BE488220LD03P001B03P001B091F1_014.ab1   461 
  498    UCD006R_B02_BE488220LD03P001B03P001B091F1_014.ab1   498 
  510  C UCD006F_B02_BE488220LD03P001B03P001B091F1_014.ab1   441 
  530    UCD006R_B02_BE488220LD03P001B03P001B091F1_014.ab1   530 
  538  C UCD006F_B02_BE488220LD03P001B03P001B091F1_014.ab1   413 
  546    UCD006R_B02_BE488220LD03P001B03P001B091F1_014.ab1   546 
  550  C UCD006F_B02_BE488220LD03P001B03P001B091F1_014.ab1   401 
  582    UCD006R_B02_BE488220LD03P001B03P001B091F1_014.ab1   582 
  586  C UCD006F_B02_BE488220LD03P001B03P001B091F1_014.ab1   365 
Contig length: old 949, new 950

Contig length: old 950, new 950
New start: 0