No. words: 1571; after pruning: 1545


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.1 (1,1:942)  604  0.32 0.00 0.16  UCD006R_D02_BE488220LD05P001B03P001B091F1_010.ab1      175   803 (0)  C UCD006F_D02_BE488220LD05P001B03P001B091F1_010.ab1   (0)   768   141 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1    UCD006R_D02_BE488220LD05P001B03P001B091F1_010.ab1     1 
  513  C UCD006F_D02_BE488220LD05P001B03P001B091F1_010.ab1   431 
  521    UCD006R_D02_BE488220LD05P001B03P001B091F1_010.ab1   521 
  525  C UCD006F_D02_BE488220LD05P001B03P001B091F1_010.ab1   419 
  533    UCD006R_D02_BE488220LD05P001B03P001B091F1_010.ab1   533 
  537  C UCD006F_D02_BE488220LD05P001B03P001B091F1_010.ab1   407 
  581    UCD006R_D02_BE488220LD05P001B03P001B091F1_010.ab1   581 
  589  C UCD006F_D02_BE488220LD05P001B03P001B091F1_010.ab1   355 
Contig length: old 943, new 943

Contig length: old 943, new 943
New start: 0