No. words: 1320; after pruning: 1294


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 7.7 (1,1:947)  363  0.00 0.00 0.00  UCD006R_F02_BE488220LD07P001B03P001B091F1_006.ab1      280   650 (1)  C UCD006F_F02_BE488220LD07P001B03P001B091F1_006.ab1   (0)   669   299 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1    UCD006R_F02_BE488220LD07P001B03P001B091F1_006.ab1     1 
  439  C UCD006F_F02_BE488220LD07P001B03P001B091F1_006.ab1   510 
  443    UCD006R_F02_BE488220LD07P001B03P001B091F1_006.ab1   443 
  479  C UCD006F_F02_BE488220LD07P001B03P001B091F1_006.ab1   470 
Contig length: old 948, new 948

Contig length: old 948, new 948
New start: 0