No. words: 1226; after pruning: 1200


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.2 (1,1:943)  276  0.00 0.00 0.00  UCD006R_G02_BE488220LD08P001B03P001B091F1_004.ab1      332   613 (0)  C UCD006F_G02_BE488220LD08P001B03P001B091F1_004.ab1   (0)   613   332 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  142 nodes

 73 str. conn. components

Path
    1    UCD006R_G02_BE488220LD08P001B03P001B091F1_004.ab1     1 
  447  C UCD006F_G02_BE488220LD08P001B03P001B091F1_004.ab1   498 
  455    UCD006R_G02_BE488220LD08P001B03P001B091F1_004.ab1   455 
  467  C UCD006F_G02_BE488220LD08P001B03P001B091F1_004.ab1   478 
Contig length: old 944, new 944

Contig length: old 944, new 944
New start: 0