No. words: 1534; after pruning: 1508


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:945)  562  0.00 0.17 0.34  UCD006R_A03_BE488220LD10P001B03P001B091F1_031.ab1      199   787 (0)  C UCD006F_A03_BE488220LD10P001B03P001B091F1_031.ab1   (0)   747   160 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1    UCD006R_A03_BE488220LD10P001B03P001B091F1_031.ab1     1 
  485  C UCD006F_A03_BE488220LD10P001B03P001B091F1_031.ab1   462 
  493    UCD006R_A03_BE488220LD10P001B03P001B091F1_031.ab1   493 
  513  C UCD006F_A03_BE488220LD10P001B03P001B091F1_031.ab1   434 
  525    UCD006R_A03_BE488220LD10P001B03P001B091F1_031.ab1   525 
  541  C UCD006F_A03_BE488220LD10P001B03P001B091F1_031.ab1   406 
  589    UCD006R_A03_BE488220LD10P001B03P001B091F1_031.ab1   589 
  593  C UCD006F_A03_BE488220LD10P001B03P001B091F1_031.ab1   354 
Contig length: old 946, new 946

Contig length: old 946, new 946
New start: 0