No. words: 1454; after pruning: 1428


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.6 (1,1:975)  467  0.00 0.00 0.00  UCD002F_C10_BE488220LD12P001B03B091F1_070.ab1      233   710 (0)  C UCD002R_C10_BE488220LD12P001B03B091R1_070.ab1   (0)   744   267 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1    UCD002F_C10_BE488220LD12P001B03B091F1_070.ab1     1 
  432  C UCD002R_C10_BE488220LD12P001B03B091R1_070.ab1   545 
  440    UCD002F_C10_BE488220LD12P001B03B091F1_070.ab1   440 
  448  C UCD002R_C10_BE488220LD12P001B03B091R1_070.ab1   529 
  464    UCD002F_C10_BE488220LD12P001B03B091F1_070.ab1   464 
  480  C UCD002R_C10_BE488220LD12P001B03B091R1_070.ab1   497 
  492    UCD002F_C10_BE488220LD12P001B03B091F1_070.ab1   492 
  496  C UCD002R_C10_BE488220LD12P001B03B091R1_070.ab1   481 
  504    UCD002F_C10_BE488220LD12P001B03B091F1_070.ab1   504 
  512  C UCD002R_C10_BE488220LD12P001B03B091R1_070.ab1   465 
Contig length: old 976, new 976

Contig length: old 976, new 976
New start: 0