No. words: 1512; after pruning: 1486


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.0 (1,1:1025)  455  1.03 0.00 0.21  UCD002F_B08_BE488220TU01P001B03B091F1_061.ab1      224   710 (0)  C UCD002R_B08_BE488220TU01P001B03B091R1_061.ab1   (0)   802   317 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1    UCD002F_B08_BE488220TU01P001B03B091F1_061.ab1     1 
  452  C UCD002R_B08_BE488220TU01P001B03B091R1_061.ab1   575 
  468    UCD002F_B08_BE488220TU01P001B03B091F1_061.ab1   468 
  488  C UCD002R_B08_BE488220TU01P001B03B091R1_061.ab1   539 
  492    UCD002F_B08_BE488220TU01P001B03B091F1_061.ab1   492 
  500  C UCD002R_B08_BE488220TU01P001B03B091R1_061.ab1   527 
  504    UCD002F_B08_BE488220TU01P001B03B091F1_061.ab1   504 
  508  C UCD002R_B08_BE488220TU01P001B03B091R1_061.ab1   519 
  512    UCD002F_B08_BE488220TU01P001B03B091F1_061.ab1   512 
  520  C UCD002R_B08_BE488220TU01P001B03B091R1_061.ab1   507 
Contig length: old 1026, new 1026

Contig length: old 1026, new 1026
New start: 0