No. words: 1093; after pruning: 1067


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.0 (1,1:501)  482  0.20 0.00 0.00  UCD003F_D01_BE488358AT02P001E04E101F1_010.ab1        1   502 (42)  C UCD003R_D01_BE488358AT02P001E04E101R1_010.ab1   (47)   502     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C UCD003R_D01_BE488358AT02P001E04E101R1_010.ab1   549 
   69    UCD003F_D01_BE488358AT02P001E04E101F1_010.ab1    22 
   73  C UCD003R_D01_BE488358AT02P001E04E101R1_010.ab1   477 
   77    UCD003F_D01_BE488358AT02P001E04E101F1_010.ab1    30 
   81  C UCD003R_D01_BE488358AT02P001E04E101R1_010.ab1   469 
   93    UCD003F_D01_BE488358AT02P001E04E101F1_010.ab1    46 
   97  C UCD003R_D01_BE488358AT02P001E04E101R1_010.ab1   453 
  109    UCD003F_D01_BE488358AT02P001E04E101F1_010.ab1    62 
  113  C UCD003R_D01_BE488358AT02P001E04E101R1_010.ab1   437 
  121    UCD003F_D01_BE488358AT02P001E04E101F1_010.ab1    74 
  129  C UCD003R_D01_BE488358AT02P001E04E101R1_010.ab1   421 
  177    UCD003F_D01_BE488358AT02P001E04E101F1_010.ab1   130 
  181  C UCD003R_D01_BE488358AT02P001E04E101R1_010.ab1   369 
  261    UCD003F_D01_BE488358AT02P001E04E101F1_010.ab1   214 
  269  C UCD003R_D01_BE488358AT02P001E04E101R1_010.ab1   281 
  297    UCD003F_D01_BE488358AT02P001E04E101F1_010.ab1   250 
  317  C UCD003R_D01_BE488358AT02P001E04E101R1_010.ab1   233 
  385    UCD003F_D01_BE488358AT02P001E04E101F1_010.ab1   338 
  429  C UCD003R_D01_BE488358AT02P001E04E101R1_010.ab1   121 
  441    UCD003F_D01_BE488358AT02P001E04E101F1_010.ab1   394 
  477  C UCD003R_D01_BE488358AT02P001E04E101R1_010.ab1    73 
  489    UCD003F_D01_BE488358AT02P001E04E101F1_010.ab1   442 
  497  C UCD003R_D01_BE488358AT02P001E04E101R1_010.ab1    53 
  525    UCD003F_D01_BE488358AT02P001E04E101F1_010.ab1   478 
  529  C UCD003R_D01_BE488358AT02P001E04E101R1_010.ab1    21 
  541    UCD003F_D01_BE488358AT02P001E04E101F1_010.ab1   494 
Contig length: old 591, new 591

Contig length: old 591, new 591
New start: 0