No. words: 1292; after pruning: 1252


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 10.2 (1,1:522)  493  0.19 0.00 0.19  UCD003F_B02_BE488358LD04P001E04E101F1_013.ab1        1   515 (165)  C UCD003R_B02_BE488358LD04P001E04E101R1_013.ab1   (90)   522     9 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C UCD003R_B02_BE488358LD04P001E04E101R1_013.ab1   612 
  110    UCD003F_B02_BE488358LD04P001E04E101F1_013.ab1    20 
  126  C UCD003R_B02_BE488358LD04P001E04E101R1_013.ab1   487 
  134    UCD003F_B02_BE488358LD04P001E04E101F1_013.ab1    44 
  166  C UCD003R_B02_BE488358LD04P001E04E101R1_013.ab1   447 
  190    UCD003F_B02_BE488358LD04P001E04E101F1_013.ab1   100 
  206  C UCD003R_B02_BE488358LD04P001E04E101R1_013.ab1   407 
  222    UCD003F_B02_BE488358LD04P001E04E101F1_013.ab1   132 
  230  C UCD003R_B02_BE488358LD04P001E04E101R1_013.ab1   383 
  238    UCD003F_B02_BE488358LD04P001E04E101F1_013.ab1   148 
  262  C UCD003R_B02_BE488358LD04P001E04E101R1_013.ab1   351 
  270    UCD003F_B02_BE488358LD04P001E04E101F1_013.ab1   180 
  314  C UCD003R_B02_BE488358LD04P001E04E101R1_013.ab1   299 
  322    UCD003F_B02_BE488358LD04P001E04E101F1_013.ab1   232 
  334  C UCD003R_B02_BE488358LD04P001E04E101R1_013.ab1   279 
  374    UCD003F_B02_BE488358LD04P001E04E101F1_013.ab1   284 
  386  C UCD003R_B02_BE488358LD04P001E04E101R1_013.ab1   227 
  398    UCD003F_B02_BE488358LD04P001E04E101F1_013.ab1   308 
  410  C UCD003R_B02_BE488358LD04P001E04E101R1_013.ab1   203 
  426    UCD003F_B02_BE488358LD04P001E04E101F1_013.ab1   336 
  430  C UCD003R_B02_BE488358LD04P001E04E101R1_013.ab1   183 
  478    UCD003F_B02_BE488358LD04P001E04E101F1_013.ab1   388 
  482  C UCD003R_B02_BE488358LD04P001E04E101R1_013.ab1   131 
  514    UCD003F_B02_BE488358LD04P001E04E101F1_013.ab1   424 
  518  C UCD003R_B02_BE488358LD04P001E04E101R1_013.ab1    95 
  522    UCD003F_B02_BE488358LD04P001E04E101F1_013.ab1   432 
Contig length: old 769, new 770

Contig length: old 770, new 770
New start: 0