No. words: 1556; after pruning: 1530


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.3 (1,1:663)  636  0.00 0.00 0.15  UCD003F_C02_BE488358LD05P001E04E101F1_006.ab1        1   664 (144)  C UCD003R_C02_BE488358LD05P001E04E101R1_006.ab1   (85)   663     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  330 nodes

 167 str. conn. components

Path
    1  C UCD003R_C02_BE488358LD05P001E04E101R1_006.ab1   748 
   93    UCD003F_C02_BE488358LD05P001E04E101F1_006.ab1     8 
   97  C UCD003R_C02_BE488358LD05P001E04E101R1_006.ab1   652 
  109    UCD003F_C02_BE488358LD05P001E04E101F1_006.ab1    24 
  121  C UCD003R_C02_BE488358LD05P001E04E101R1_006.ab1   628 
  129    UCD003F_C02_BE488358LD05P001E04E101F1_006.ab1    44 
  169  C UCD003R_C02_BE488358LD05P001E04E101R1_006.ab1   580 
  173    UCD003F_C02_BE488358LD05P001E04E101F1_006.ab1    88 
  185  C UCD003R_C02_BE488358LD05P001E04E101R1_006.ab1   564 
  189    UCD003F_C02_BE488358LD05P001E04E101F1_006.ab1   104 
  221  C UCD003R_C02_BE488358LD05P001E04E101R1_006.ab1   528 
  233    UCD003F_C02_BE488358LD05P001E04E101F1_006.ab1   148 
  301  C UCD003R_C02_BE488358LD05P001E04E101R1_006.ab1   448 
  337    UCD003F_C02_BE488358LD05P001E04E101F1_006.ab1   252 
  449  C UCD003R_C02_BE488358LD05P001E04E101R1_006.ab1   300 
  501    UCD003F_C02_BE488358LD05P001E04E101F1_006.ab1   416 
  505  C UCD003R_C02_BE488358LD05P001E04E101R1_006.ab1   244 
  529    UCD003F_C02_BE488358LD05P001E04E101F1_006.ab1   444 
  589  C UCD003R_C02_BE488358LD05P001E04E101R1_006.ab1   160 
  633    UCD003F_C02_BE488358LD05P001E04E101F1_006.ab1   548 
  641  C UCD003R_C02_BE488358LD05P001E04E101R1_006.ab1   108 
  653    UCD003F_C02_BE488358LD05P001E04E101F1_006.ab1   568 
  657  C UCD003R_C02_BE488358LD05P001E04E101R1_006.ab1    92 
  665    UCD003F_C02_BE488358LD05P001E04E101F1_006.ab1   580 
  669  C UCD003R_C02_BE488358LD05P001E04E101R1_006.ab1    80 
  673    UCD003F_C02_BE488358LD05P001E04E101F1_006.ab1   588 
  681  C UCD003R_C02_BE488358LD05P001E04E101R1_006.ab1    68 
  705    UCD003F_C02_BE488358LD05P001E04E101F1_006.ab1   620 
  709  C UCD003R_C02_BE488358LD05P001E04E101R1_006.ab1    40 
  713    UCD003F_C02_BE488358LD05P001E04E101F1_006.ab1   628 
  725  C UCD003R_C02_BE488358LD05P001E04E101R1_006.ab1    24 
  733    UCD003F_C02_BE488358LD05P001E04E101F1_006.ab1   648 
Contig length: old 892, new 893

Contig length: old 893, new 893
New start: 0