No. words: 1539; after pruning: 1499


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.0 (1,1:651)  625  0.15 0.15 0.00  UCD003F_D02_BE488358LD06P001E04E101F1_014.ab1        1   652 (153)  C UCD003R_D02_BE488358LD06P001E04E101R1_014.ab1   (81)   653     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1  C UCD003R_D02_BE488358LD06P001E04E101R1_014.ab1   734 
   89    UCD003F_D02_BE488358LD06P001E04E101F1_014.ab1     8 
  296  C UCD003R_D02_BE488358LD06P001E04E101R1_014.ab1   438 
  300    UCD003F_D02_BE488358LD06P001E04E101F1_014.ab1   219 
  416  C UCD003R_D02_BE488358LD06P001E04E101R1_014.ab1   318 
  480    UCD003F_D02_BE488358LD06P001E04E101F1_014.ab1   399 
  484  C UCD003R_D02_BE488358LD06P001E04E101R1_014.ab1   250 
  672    UCD003F_D02_BE488358LD06P001E04E101F1_014.ab1   591 
  676  C UCD003R_D02_BE488358LD06P001E04E101R1_014.ab1    58 
  702    UCD003F_D02_BE488358LD06P001E04E101F1_014.ab1   621 
  706  C UCD003R_D02_BE488358LD06P001E04E101R1_014.ab1    28 
  710    UCD003F_D02_BE488358LD06P001E04E101F1_014.ab1   629 
Contig length: old 887, new 886

Contig length: old 886, new 886
New start: 0