No. words: 1549; after pruning: 1509


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.5 (1,1:653)  629  0.15 0.00 0.00  UCD003F_E02_BE488358LD07P001E04E101F1_007.ab1        1   654 (157)  C UCD003R_E02_BE488358LD07P001E04E101R1_007.ab1   (84)   654     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  326 nodes

 165 str. conn. components

Path
    1  C UCD003R_E02_BE488358LD07P001E04E101R1_007.ab1   738 
   92    UCD003F_E02_BE488358LD07P001E04E101F1_007.ab1     8 
  100  C UCD003R_E02_BE488358LD07P001E04E101R1_007.ab1   639 
  108    UCD003F_E02_BE488358LD07P001E04E101F1_007.ab1    24 
  120  C UCD003R_E02_BE488358LD07P001E04E101R1_007.ab1   619 
  128    UCD003F_E02_BE488358LD07P001E04E101F1_007.ab1    44 
  168  C UCD003R_E02_BE488358LD07P001E04E101R1_007.ab1   571 
  172    UCD003F_E02_BE488358LD07P001E04E101F1_007.ab1    88 
  176  C UCD003R_E02_BE488358LD07P001E04E101R1_007.ab1   563 
  184    UCD003F_E02_BE488358LD07P001E04E101F1_007.ab1   100 
  224  C UCD003R_E02_BE488358LD07P001E04E101R1_007.ab1   515 
  228    UCD003F_E02_BE488358LD07P001E04E101F1_007.ab1   144 
  252  C UCD003R_E02_BE488358LD07P001E04E101R1_007.ab1   487 
  260    UCD003F_E02_BE488358LD07P001E04E101F1_007.ab1   176 
  272  C UCD003R_E02_BE488358LD07P001E04E101R1_007.ab1   467 
  284    UCD003F_E02_BE488358LD07P001E04E101F1_007.ab1   200 
  300  C UCD003R_E02_BE488358LD07P001E04E101R1_007.ab1   439 
  304    UCD003F_E02_BE488358LD07P001E04E101F1_007.ab1   220 
  364  C UCD003R_E02_BE488358LD07P001E04E101R1_007.ab1   375 
  472    UCD003F_E02_BE488358LD07P001E04E101F1_007.ab1   388 
  492  C UCD003R_E02_BE488358LD07P001E04E101R1_007.ab1   247 
  568    UCD003F_E02_BE488358LD07P001E04E101F1_007.ab1   484 
  584  C UCD003R_E02_BE488358LD07P001E04E101R1_007.ab1   155 
  636    UCD003F_E02_BE488358LD07P001E04E101F1_007.ab1   552 
  640  C UCD003R_E02_BE488358LD07P001E04E101R1_007.ab1    99 
  644    UCD003F_E02_BE488358LD07P001E04E101F1_007.ab1   560 
  660  C UCD003R_E02_BE488358LD07P001E04E101R1_007.ab1    79 
  676    UCD003F_E02_BE488358LD07P001E04E101F1_007.ab1   592 
  680  C UCD003R_E02_BE488358LD07P001E04E101R1_007.ab1    59 
  705    UCD003F_E02_BE488358LD07P001E04E101F1_007.ab1   621 
Contig length: old 895, new 895

Contig length: old 895, new 895
New start: 0