No. words: 1279; after pruning: 1225


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.1 (1,1:398)  381  0.00 0.00 0.00  UCD003F_F02_BE488358LD08P001E04E101F1_015.ab1        5   399 (236)  C UCD003R_F02_BE488358LD08P001E04E101R1_015.ab1   (249)   395     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  196 nodes

 100 str. conn. components

Path
    1  C UCD003R_F02_BE488358LD08P001E04E101R1_015.ab1   644 
  265    UCD003F_F02_BE488358LD08P001E04E101F1_015.ab1    20 
  269  C UCD003R_F02_BE488358LD08P001E04E101R1_015.ab1   376 
  289    UCD003F_F02_BE488358LD08P001E04E101F1_015.ab1    44 
  293  C UCD003R_F02_BE488358LD08P001E04E101R1_015.ab1   352 
  313    UCD003F_F02_BE488358LD08P001E04E101F1_015.ab1    68 
  337  C UCD003R_F02_BE488358LD08P001E04E101R1_015.ab1   308 
  341    UCD003F_F02_BE488358LD08P001E04E101F1_015.ab1    96 
  353  C UCD003R_F02_BE488358LD08P001E04E101R1_015.ab1   292 
  361    UCD003F_F02_BE488358LD08P001E04E101F1_015.ab1   116 
  365  C UCD003R_F02_BE488358LD08P001E04E101R1_015.ab1   280 
  377    UCD003F_F02_BE488358LD08P001E04E101F1_015.ab1   132 
  381  C UCD003R_F02_BE488358LD08P001E04E101R1_015.ab1   264 
  405    UCD003F_F02_BE488358LD08P001E04E101F1_015.ab1   160 
  425  C UCD003R_F02_BE488358LD08P001E04E101R1_015.ab1   220 
  465    UCD003F_F02_BE488358LD08P001E04E101F1_015.ab1   220 
  469  C UCD003R_F02_BE488358LD08P001E04E101R1_015.ab1   176 
  477    UCD003F_F02_BE488358LD08P001E04E101F1_015.ab1   232 
  485  C UCD003R_F02_BE488358LD08P001E04E101R1_015.ab1   160 
  565    UCD003F_F02_BE488358LD08P001E04E101F1_015.ab1   320 
  569  C UCD003R_F02_BE488358LD08P001E04E101R1_015.ab1    76 
  577    UCD003F_F02_BE488358LD08P001E04E101F1_015.ab1   332 
  585  C UCD003R_F02_BE488358LD08P001E04E101R1_015.ab1    60 
  633    UCD003F_F02_BE488358LD08P001E04E101F1_015.ab1   388 
Contig length: old 880, new 880

Contig length: old 880, new 880
New start: 0 
S Change at: 691; seg lengths: entry 1, contig 1
S Change at: 751; seg lengths: entry 1, contig 1