No. words: 1533; after pruning: 1507


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.8 (1,1:639)  603  0.31 0.00 0.16  UCD003F_A03_BE488358LD11P001E04E101F1_017.ab1        4   640 (145)  C UCD003R_A03_BE488358LD11P001E04E101R1_017.ab1   (112)   636     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C UCD003R_A03_BE488358LD11P001E04E101R1_017.ab1   748 
  125    UCD003F_A03_BE488358LD11P001E04E101F1_017.ab1    16 
  173  C UCD003R_A03_BE488358LD11P001E04E101R1_017.ab1   576 
  177    UCD003F_A03_BE488358LD11P001E04E101F1_017.ab1    68 
  185  C UCD003R_A03_BE488358LD11P001E04E101R1_017.ab1   564 
  189    UCD003F_A03_BE488358LD11P001E04E101F1_017.ab1    80 
  217  C UCD003R_A03_BE488358LD11P001E04E101R1_017.ab1   532 
  233    UCD003F_A03_BE488358LD11P001E04E101F1_017.ab1   124 
  301  C UCD003R_A03_BE488358LD11P001E04E101R1_017.ab1   448 
  305    UCD003F_A03_BE488358LD11P001E04E101F1_017.ab1   196 
  373  C UCD003R_A03_BE488358LD11P001E04E101R1_017.ab1   376 
  405    UCD003F_A03_BE488358LD11P001E04E101F1_017.ab1   296 
  429  C UCD003R_A03_BE488358LD11P001E04E101R1_017.ab1   320 
  573    UCD003F_A03_BE488358LD11P001E04E101F1_017.ab1   464 
  581  C UCD003R_A03_BE488358LD11P001E04E101R1_017.ab1   168 
  681    UCD003F_A03_BE488358LD11P001E04E101F1_017.ab1   572 
  689  C UCD003R_A03_BE488358LD11P001E04E101R1_017.ab1    60 
  705    UCD003F_A03_BE488358LD11P001E04E101F1_017.ab1   596 
  728  C UCD003R_A03_BE488358LD11P001E04E101R1_017.ab1    21 
  732    UCD003F_A03_BE488358LD11P001E04E101F1_017.ab1   623 
Contig length: old 893, new 894

Contig length: old 894, new 894
New start: 0