No. words: 1566; after pruning: 1540


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.5 (1,1:663)  622  0.30 0.30 0.15  UCD003F_C03_BE488358LD13P001E04E101F1_018.ab1        1   664 (154)  C UCD003R_C03_BE488358LD13P001E04E101R1_018.ab1   (83)   665     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  318 nodes

 161 str. conn. components

Path
    1  C UCD003R_C03_BE488358LD13P001E04E101R1_018.ab1   748 
   91    UCD003F_C03_BE488358LD13P001E04E101F1_018.ab1     8 
  170  C UCD003R_C03_BE488358LD13P001E04E101R1_018.ab1   577 
  174    UCD003F_C03_BE488358LD13P001E04E101F1_018.ab1    91 
  182  C UCD003R_C03_BE488358LD13P001E04E101R1_018.ab1   565 
  190    UCD003F_C03_BE488358LD13P001E04E101F1_018.ab1   107 
  214  C UCD003R_C03_BE488358LD13P001E04E101R1_018.ab1   533 
  230    UCD003F_C03_BE488358LD13P001E04E101F1_018.ab1   147 
  246  C UCD003R_C03_BE488358LD13P001E04E101R1_018.ab1   501 
  262    UCD003F_C03_BE488358LD13P001E04E101F1_018.ab1   179 
  266  C UCD003R_C03_BE488358LD13P001E04E101R1_018.ab1   481 
  322    UCD003F_C03_BE488358LD13P001E04E101F1_018.ab1   239 
  350  C UCD003R_C03_BE488358LD13P001E04E101R1_018.ab1   397 
  354    UCD003F_C03_BE488358LD13P001E04E101F1_018.ab1   271 
  390  C UCD003R_C03_BE488358LD13P001E04E101R1_018.ab1   357 
  482    UCD003F_C03_BE488358LD13P001E04E101F1_018.ab1   399 
  502  C UCD003R_C03_BE488358LD13P001E04E101R1_018.ab1   245 
  510    UCD003F_C03_BE488358LD13P001E04E101F1_018.ab1   427 
  514  C UCD003R_C03_BE488358LD13P001E04E101R1_018.ab1   233 
  518    UCD003F_C03_BE488358LD13P001E04E101F1_018.ab1   435 
  522  C UCD003R_C03_BE488358LD13P001E04E101R1_018.ab1   225 
  530    UCD003F_C03_BE488358LD13P001E04E101F1_018.ab1   447 
  602  C UCD003R_C03_BE488358LD13P001E04E101R1_018.ab1   145 
  634    UCD003F_C03_BE488358LD13P001E04E101F1_018.ab1   551 
  650  C UCD003R_C03_BE488358LD13P001E04E101R1_018.ab1    97 
  654    UCD003F_C03_BE488358LD13P001E04E101F1_018.ab1   571 
  658  C UCD003R_C03_BE488358LD13P001E04E101R1_018.ab1    89 
  674    UCD003F_C03_BE488358LD13P001E04E101F1_018.ab1   591 
  686  C UCD003R_C03_BE488358LD13P001E04E101R1_018.ab1    61 
  702    UCD003F_C03_BE488358LD13P001E04E101F1_018.ab1   619 
Contig length: old 902, new 901

Contig length: old 901, new 901
New start: 0 
S Change at: 101; seg lengths: entry 1, contig 1