No. words: 1355; after pruning: 1329


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.7 (1,1:1041)  296  0.64 0.00 0.00  UCD003F_B01_BE488358TU02P001E04E101F1_009.ab1      275   587 (0)  C UCD003R_B01_BE488358TU02P001E04E101R1_009.ab1   (0)   768   456 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  156 nodes

 80 str. conn. components

Path
    1    UCD003F_B01_BE488358TU02P001E04E101F1_009.ab1     1 
  348  C UCD003R_B01_BE488358TU02P001E04E101R1_009.ab1   695 
  352    UCD003F_B01_BE488358TU02P001E04E101F1_009.ab1   352 
  372  C UCD003R_B01_BE488358TU02P001E04E101R1_009.ab1   671 
  376    UCD003F_B01_BE488358TU02P001E04E101F1_009.ab1   376 
  388  C UCD003R_B01_BE488358TU02P001E04E101R1_009.ab1   655 
  404    UCD003F_B01_BE488358TU02P001E04E101F1_009.ab1   404 
  420  C UCD003R_B01_BE488358TU02P001E04E101R1_009.ab1   623 
  440    UCD003F_B01_BE488358TU02P001E04E101F1_009.ab1   440 
  448  C UCD003R_B01_BE488358TU02P001E04E101R1_009.ab1   595 
  460    UCD003F_B01_BE488358TU02P001E04E101F1_009.ab1   460 
  464  C UCD003R_B01_BE488358TU02P001E04E101R1_009.ab1   579 
  492    UCD003F_B01_BE488358TU02P001E04E101F1_009.ab1   492 
  496  C UCD003R_B01_BE488358TU02P001E04E101R1_009.ab1   547 
  556    UCD003F_B01_BE488358TU02P001E04E101F1_009.ab1   556 
  560  C UCD003R_B01_BE488358TU02P001E04E101R1_009.ab1   483 
Contig length: old 1042, new 1042

Contig length: old 1042, new 1042
New start: 0