No. words: 1318; after pruning: 1292


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.5 (1,1:610)  593  0.16 0.00 0.16  UCD016F_F11_BE489901AS01P012B04B101F1_085.ab1        1   608 (51)  C UCD016R_F11_BE489901AS01P012B04B101R1_085.ab1   (49)   610     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1  C UCD016R_F11_BE489901AS01P012B04B101R1_085.ab1   659 
   61    UCD016F_F11_BE489901AS01P012B04B101F1_085.ab1    12 
   65  C UCD016R_F11_BE489901AS01P012B04B101R1_085.ab1   595 
   81    UCD016F_F11_BE489901AS01P012B04B101F1_085.ab1    32 
   85  C UCD016R_F11_BE489901AS01P012B04B101R1_085.ab1   575 
   93    UCD016F_F11_BE489901AS01P012B04B101F1_085.ab1    44 
  105  C UCD016R_F11_BE489901AS01P012B04B101R1_085.ab1   555 
  137    UCD016F_F11_BE489901AS01P012B04B101F1_085.ab1    88 
  145  C UCD016R_F11_BE489901AS01P012B04B101R1_085.ab1   515 
  153    UCD016F_F11_BE489901AS01P012B04B101F1_085.ab1   104 
  249  C UCD016R_F11_BE489901AS01P012B04B101R1_085.ab1   411 
  253    UCD016F_F11_BE489901AS01P012B04B101F1_085.ab1   204 
  261  C UCD016R_F11_BE489901AS01P012B04B101R1_085.ab1   399 
  265    UCD016F_F11_BE489901AS01P012B04B101F1_085.ab1   216 
  287  C UCD016R_F11_BE489901AS01P012B04B101R1_085.ab1   373 
  295    UCD016F_F11_BE489901AS01P012B04B101F1_085.ab1   246 
  319  C UCD016R_F11_BE489901AS01P012B04B101R1_085.ab1   341 
  323    UCD016F_F11_BE489901AS01P012B04B101F1_085.ab1   274 
  331  C UCD016R_F11_BE489901AS01P012B04B101R1_085.ab1   329 
  339    UCD016F_F11_BE489901AS01P012B04B101F1_085.ab1   290 
  375  C UCD016R_F11_BE489901AS01P012B04B101R1_085.ab1   285 
  387    UCD016F_F11_BE489901AS01P012B04B101F1_085.ab1   338 
  443  C UCD016R_F11_BE489901AS01P012B04B101R1_085.ab1   217 
  539    UCD016F_F11_BE489901AS01P012B04B101F1_085.ab1   490 
  543  C UCD016R_F11_BE489901AS01P012B04B101R1_085.ab1   117 
  551    UCD016F_F11_BE489901AS01P012B04B101F1_085.ab1   502 
  583  C UCD016R_F11_BE489901AS01P012B04B101R1_085.ab1    77 
  591    UCD016F_F11_BE489901AS01P012B04B101F1_085.ab1   542 
  595  C UCD016R_F11_BE489901AS01P012B04B101R1_085.ab1    65 
  607    UCD016F_F11_BE489901AS01P012B04B101F1_085.ab1   558 
  619  C UCD016R_F11_BE489901AS01P012B04B101R1_085.ab1    42 
  635    UCD016F_F11_BE489901AS01P012B04B101F1_085.ab1   586 
Contig length: old 707, new 708

Contig length: old 708, new 708
New start: 0